454 whole genome shotgun sequencing of genomic DNA paired-end library... - SRA

SRX004051: 454 whole genome shotgun sequencing of genomic DNA paired-end library '454-1970' containing sample 'BROAD:SEQUENCING_SAMPLE:17349.0'
1 LS454 (454 GS FLX) run: 6,067 spots, 1.8M bases, 3.5Mb downloads

UUID: 9ca621f4-8af6-4b45-b55b-ede33de27841

Design: 15x fragment; 30x physical paired

Submitted by: Broad Institute (BI)

Study: Reference Genome for the Human Microbiome Project

PRJNA40049 • SRP001644 • All experiments • All runs

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<b><i>Klebsiella</i> sp. 1_1_55</b>. This strain will be used for comparative genome analysis.

Sample: Generic sample from Klebsiella sp. 1_1_55

SAMN00102974 • SRS002810 • All experiments • All runs

Organism: Klebsiella variicola

Library:

Name: 454-1970

Instrument: 454 GS FLX

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

barcode

Group tag	Basecalls
Bern	TGGTTGGTC

14 forward reverse

Experiment attributes: (show all 5 attributes...) (hide...)

gssr_id: 17349.2

lsid: BROAD:SEQUENCING_SAMPLE:17349.2

material_type: Genomic DNA

project: G1755

work_request: 17641

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2009-02-24 15:22:01.0	454BaseCaller	2.0.00.17

Runs: 1 run, 6,067 spots, 1.8M bases, 3.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR138241	6,067	1.8M	3.5Mb	2011-03-25

ID:: 4307

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